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Whole genome sequencing of bacterial genomes - tools and applications

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Week 1: Introduction to sub-typing

General Principles in typing of Bacteria

By Valeria Bortolaia

Date: 01/10/2016 09:00 - Duration: 00:12:06 - Views: 99

720p (324 M)

Surveillance of Antimicrobial Resistance Using Whole Genome Sequencing

By Rene S. Hendriksen

Date: 01/10/2016 08:00 - Duration: 00:12:40 - Views: 75

720p (384 M)

Week 2: Introduction to NGS

Application of Genomic Tools - One Technology Take´s It All

By Rene S. Hendriksen. Version 2

Date: 02/10/2016 10:00 - Duration: 00:11:40 - Views: 47

720p (299 M)

Introduction to Next-Generation Sequencing (NGS)

By Pimlapas Leekitcharoenphon

Date: 02/10/2016 09:00 - Duration: 00:19:08 - Views: 52

720p (581 M)

De Novo Assembly, for Raw Reads to Contigs: Assembler Tool Description and Application

By Rolf Sommer Kaas

Date: 02/10/2016 08:00 - Duration: 00:05:51 - Views: 46

720p (111 M)

Week 3: NGS Tools for Species, MLST and Resistance Genes Identification

Species identification: KmerFinder tool description and applications

By Pimlapas Leekitcharoenphon

Date: 03/10/2016 10:00 - Duration: 00:08:53 - Views: 41

720p (123 M)

MLST Typing: MLST tool description and applications

By Pimlapas Leekitcharoenphon

Date: 03/10/2016 09:00 - Duration: 00:08:45 - Views: 34

720p (141 M)

Resistance Gene Detection: ResFinder Tool description and applications

By Pimlapas Leekitcharoenphon

Date: 03/10/2016 08:00 - Duration: 00:12:22 - Views: 35

720p (183 M)

Week 4: NGS Tools for serotyping and plasmid Identification

Salmonella Serotype Identification: SeqSero Tool Description and Application

By Rolf Sommer Kaas

Date: 04/10/2016 10:00 - Duration: 00:05:34 - Views: 15

720p (103 M)

E.coli Serotype Identification: SerotypeFinder Tool Description and Application

By Rolf Sommer Kaas

Date: 04/10/2016 09:00 - Duration: 00:06:41 - Views: 17

720p (141 M)

Plasmid replicon identification and plasmid typing

PlasmidFinder and pMLST tools description and application. By Pimlapas Leekitcharoenphon

Date: 04/10/2016 08:00 - Duration: 00:12:12 - Views: 16

720p (215 M)

Week 5: NGS Tools For Bacterial Analysis Pipeline, Phylogeny and build your own database

Bacterial Analysis Pipeline - Batch Upload

By Pimlapas Leekitcharoenphon

Date: 05/10/2016 11:00 - Duration: 00:12:42 - Views: 35

720p (188 M)

Phylogenetic Relatedness: CSIPhylogeny Tool Description and Application

By Rolf Sommer Kaas

Date: 05/10/2016 10:00 - Duration: 00:13:03 - Views: 30

720p (248 M)

Multipurpose detection of genetic markers - MyDbFinder tool description and application

By Pimlapas Leekitcharoenphon

Date: 05/10/2016 09:00 - Duration: 00:10:01 - Views: 12

720p (156 M)

Closing remarks

Closing Remarks to Course Completion

By Pimlapas Leekitcharoenphon

Date: 28/04/2017 08:00 - Duration: 00:01:58 - Views: 8

720p (55 M)

Welcome

Welcome to the Course on Whole Genome Sequencing of Bacterial Genomes - Tools and Applications

By Pimlapas Leekitcharoenphon & Lina Cavaco

Date: 28/04/2017 09:00 - Duration: 00:07:39 - Views: 15

720p (251 M)

Total duration: 02:41:15